3292 COG2319Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3292	chr_3	COG2319	604746	606101	+	COG2319

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444705	Thaps3292.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0244

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0091	0.31	0.00000003 0.31

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9487	5241 RNase_P_p30 superfamily 0.9125	4921 DUF2779 superfamily 0.8791	3650 hypothetical protein 0.8707	31819 DUF2419 superfamily 0.8637	7031 CIA30 superfamily 0.854
13308 PLN02948 0.852	20653 PseudoU_synth superfamily 0.8508	36917 TGT superfamily 0.8456	21709 hypothetical protein 0.8417

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG2319		FOG: WD40 repeat [General function prediction only]	-	63.9543	2.74E-11	67 - 414	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47416	PHATRDRAFT_47416	259586	181880	Not available	Cre03.g178050.t1.1	AT2G47790.1	312990

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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