20658 Nop53Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20658	chr_1	Nop53	638256	639763	-	Nop53

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453430	Thaps20658.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0199	0.24	14 45

Most Highly Correlated Transcripts

269776 Ribosomal_L1 0.948	21725 Brix superfamily 0.9434	32807 DEADc 0.9408	34006 Sun 0.9372	22203 (Tp_CCHH28) zf-C2H2_2 0.9342	36406 Ribosomal_L7_archeal_euk 0.9332
39003 NIP7 0.9264	34959 DUS_like_FMN 0.9261	25484 hypothetical protein 0.9249	42594 Ribosomal_P0_like 0.9243

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nop53		Nop53 (60S ribosomal biogenesis); This nucleolar family of proteins are involved in 60S ribosomal...	-	70.1279	2.45E-13	189 - 437	multi-dom	254416

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46846	PHATR_46846	Not available	325292	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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