22203 (Tp_CCHH28) zf-C2H2_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22203	chr_4	(Tp_CCHH28) zf-C2H2_2	842891	844469	-	zf-C2H2_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453331	Thaps22203.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0276	0.21	2.9 310

Most Highly Correlated Transcripts

22212 COG5638 0.9424	42594 Ribosomal_P0_like 0.9405	34959 DUS_like_FMN 0.9346	20658 Nop53 0.9342	268559 COG1084 0.9336	bd1667 (bd1667) Mpp10 0.9326
268145 PLN00040 0.9321	32807 DEADc 0.9313	23354 RNA-binding protein of the pumilio family 0.9283	34006 Sun 0.9279

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-C2H2_2 superfamily		C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger domain.	-	140.065	8.22E-40	189 - 286	superfamily	257274
zf-C2H2_2 superfamily		C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger domain.	-	140.065	8.22E-40	189 - 286	superfamily	257274

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47919	PHATRDRAFT_47919	227717	256327	210306	Cre17.g716400.t1.2	AT4G31420.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0005634 GO:0008270 -

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