20763 CAF1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20763 chr_1 CAF1 1156013 1157547 + CAF1

Synonyms

NCBI ID Ensembl Genomes exon ID
7446839 Thaps20763.2, Thaps20763.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0192

Most Highly Correlated Transcripts

30701

PRK05279
0.9445

38736

S_TKc
0.9354

31993

DUF3449
0.9288

36419

RabGAP-TBC
0.9288

10774

hypothetical protein
0.9273

25025

PHear_NECAP
0.9254

270087

WD40
0.9245

29469

hypothetical protein
0.9243

23819

hypothetical protein
0.9229

23388

DUF106
0.9205

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAF1 CAF1 family ribonuclease; The major pathways of mRNA turnover in eukaryotes initiate with... cl17591 271.816 1.14E-89 79 - 293 specific 147159
CAF1 superfamily CAF1 family ribonuclease; The major pathways of mRNA turnover in eukaryotes initiate with... - 271.816 1.14E-89 79 - 293 superfamily 248145

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9576 PHATRDRAFT_9576 203468 306608 Not available Cre03.g157300.t1.2 AT5G10960.1 474397

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0005634 GO:0016481 GO:0016564 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0016481

NA

Details: 
NA
GO Category: 
NA

GO:0016564

NA

Details: 
NA
GO Category: 
NA

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