10234 PLN00093
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10234 chr_15 PLN00093 680683 682300 - PLN00093

Synonyms

NCBI ID Ensembl Genomes exon ID
7450281 Thaps10234.1, Thaps10234.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0237
 0.26

Most Highly Correlated Transcripts

32201

Cob-chelat-sub
0.9672

26573

(ChlH1) PLN03069
0.9546

bd218

(bd218) Chloroa_b-bind superfamily
0.953

575

PRK00062
0.9525

270281

hypothetical protein
0.9454

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9435

270336

hypothetical protein
0.9387

bd672

(bd672) NA
0.9353

270340

hypothetical protein
0.9332

4439

hypothetical protein
0.9277

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 605.362 0 44 - 445 superfamily 267487
PLN00093 geranylgeranyl diphosphate reductase; Provisional - 827.853 0 1 - 458 multi-dom 177713

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31683 PHATRDRAFT_31683 179770 297804 432259 Cre01.g050950.t1.2 AT1G74470.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006118 GO:0008152 GO:0016491 GO:0015979 GO:0015995 GO:0045550 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0015979

photosynthesis

Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO Category: 
BP

GO:0015995

chlorophyll biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
GO Category: 
BP

GO:0045550

geranylgeranyl reductase activity

Details: 
Catalysis of the formation of phytyl group from the stepwise reduction of a geranylgeranyl group.
GO Category: 
MF

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