20921 S2P-M50_like_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20921 chr_1 S2P-M50_like_2 2012152 2014844 - S2P-M50_like_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7447609 Thaps20921.1, Thaps20921.2, Thaps20921.4, Thaps20921.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0287
 0.36

Most Highly Correlated Transcripts

12153

hypothetical protein
0.9019

10881

hypothetical protein
0.9012

bd392

(bd392) DEXDc
0.901

262637

P4Hc
0.8975

263994

Adaptin_N
0.8857

bd1949

(bd1949) NA
0.8848

270251

(NTT4) hypothetical protein
0.8845

bd1893

(bd1893) NA
0.8814

263997

(APA1) Adaptin_N
0.8806

7695

SPRY_RanBP_like
0.8788

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which... cl10020 100.382 5.35E-24 563 - 744 specific 100081
S2P-M50 superfamily Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane... - 100.382 5.35E-24 563 - 744 superfamily 245232
Peptidase_M50 Peptidase family M50; Peptidase family M50. - 67.0876 1.18E-12 565 - 746 multi-dom 251129

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 326174 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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