21239 Cyt_b561_FRRS1_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21239	chr_2	Cyt_b561_FRRS1_like	807921	809488	+	Cyt_b561_FRRS1_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450223	Thaps21239.1, Thaps21239.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0212

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0269	0.41	25000 54000

Most Highly Correlated Transcripts

2985 hypothetical protein 0.9217	4108 hypothetical protein 0.9148	6093 hypothetical protein 0.9052	269624 TIM_phosphate_binding superfamily 0.8968	3564 hypothetical protein 0.8949	37118 FeThRed_B 0.8949
8369 hypothetical protein 0.893	6960 Methyltransf_31 0.893	9115 DnaJ 0.8915	2107 hypothetical protein 0.8878

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cyt_b561_FRRS1_like		Eukaryotic cytochrome b(561), including the FRRS1 gene product; Cytochrome b(561), as found in...	cl14616	84.3186	2.88E-19	204 - 364	specific	176490
Cyt_b561 superfamily		Eukaryotic cytochrome b(561); Cytochrome b(561) is a family of endosomal or secretory vesicle-...	-	84.3186	2.88E-19	204 - 364	superfamily	265434

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
29950		Not available	220288	24264	Not available	Not available	AT5G10980.1	354087

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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