21553 Nop16 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21553	chr_2	Nop16 superfamily	2454100	2454837	-	Nop16 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452934	Thaps21553.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0224

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0276	0.21	2.9 310

Most Highly Correlated Transcripts

21725 Brix superfamily 0.9486	31465 Brix 0.9361	25582 hypothetical protein 0.934	32807 DEADc 0.93	28755 NSA2 0.9299	40509 (RL30) Ribosomal_L24e_L24 0.9269
18198 RRM_NIFK_like 0.9254	28300 dimethyladenosine transferase 0.9233	22498 DEXDc superfamily 0.9187	22099 hypothetical protein 0.9185

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Nop16 superfamily		Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.	-	59.7128	3.26E-12	64 - 119	superfamily	255353

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32139	PHATRDRAFT_32139	237848	174606	Not available	Not available	Not available	249768

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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