21580 RNB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21580 chr_2 RNB 2657492 2660807 - RNB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0476

Most Highly Correlated Transcripts

10753

hypothetical protein
0.9296

8552

hypothetical protein
0.9178

12836

EEP superfamily
0.9148

24331

(Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily
0.9145

24997

hypothetical protein
0.9115

6068

KH-I
0.9089

263599

COG3899
0.9087

22882

PUB
0.9079

21410

hypothetical protein
0.9066

21733

hypothetical protein
0.903

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNB RNB domain; This domain is the catalytic domain of ribonuclease II. cl19762 183.268 2.37E-51 366 - 739 specific 250123
RNB superfamily RNB domain; This domain is the catalytic domain of ribonuclease II. - 183.268 2.37E-51 366 - 739 superfamily 268115

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43677 PHATRDRAFT_43677 262325 318962 Not available Cre12.g500650.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0004540 GO:0008859 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004540

ribonuclease activity

Details: 
Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
GO Category: 
MF

GO:0008859

exoribonuclease II activity

Details: 
Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction.
GO Category: 
MF

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