22122 JmjC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22122 chr_4 JmjC 388801 391187 + JmjC

Synonyms

NCBI ID Ensembl Genomes exon ID
7442083 Thaps22122.4, Thaps22122.2, Thaps22122.3, Thaps22122.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0327

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0198
 0.40

Most Highly Correlated Transcripts

bd1946

(bd1946) NA
0.9251

bd690

(bd690) NA
0.9002

bd1934

(bd1934) NA
0.8938

bd1667

(bd1667) Mpp10
0.8813

bd738

(bd738) NA
0.8673

bd1840

(bd1840) NA
0.8668

bd1801

(bd1801) NA
0.8662

37609

PKc_like superfamily
0.8629

bd1877

(bd1877) NA
0.8627

40200

TRX_reduct
0.8615

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
JmjC superfamily JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins... - 147.442 3.37E-42 204 - 320 superfamily 202224
JmjC superfamily JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins... - 147.442 3.37E-42 204 - 320 superfamily 202224

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
31383 PHATRDRAFT_48109 PHATRDRAFT_48109 237169 32023 462882 Cre02.g078700.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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