22269 CPSF_A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22269 chr_4 CPSF_A 1115506 1122501 - CPSF_A

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0448

Most Highly Correlated Transcripts

5875

hypothetical protein
0.8943

21568

hypothetical protein
0.8868

22244

hypothetical protein
0.8847

12836

EEP superfamily
0.8847

9912

hypothetical protein
0.8826

41117

PRP1_N
0.876

24604

hypothetical protein
0.8743

263000

RRM2_U2AF65
0.8677

6068

KH-I
0.8676

21700

hypothetical protein
0.8655

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CPSF_A superfamily CPSF A subunit region; This family includes a region that lies towards the C-terminus of the... - 188.975 2.75E-52 1420 - 1786 superfamily 251781
CPSF_A superfamily CPSF A subunit region; This family includes a region that lies towards the C-terminus of the... - 188.975 2.75E-52 1420 - 1786 superfamily 251781

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42753 PHATRDRAFT_42753 167421 184691 Not available Not available AT5G51660.1 490211

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0008152 GO:0016491 GO:0003676 GO:0005634 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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