263000 RRM2_U2AF65
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263000 chr_6 RRM2_U2AF65 1663695 1665321 + RRM2_U2AF65

Synonyms

NCBI ID Ensembl Genomes exon ID
7444572 Thaps263000.3, Thaps263000.2, Thaps263000.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0428

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0248
 0.34

Most Highly Correlated Transcripts

12836

EEP superfamily
0.8971

9108

PRP3 superfamily
0.8739

12899

AAA
0.8706

22269

CPSF_A
0.8677

26743

IF-2B
0.8557

263997

(APA1) Adaptin_N
0.8513

8937

hypothetical protein
0.8391

13448

Sec1
0.8373

264371

MFS
0.8357

11441

hypothetical protein
0.8296

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_U2AF65 RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa... cl17169 116.176 1.03E-31 233 - 304 specific 240677
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 105.315 8.76E-28 103 - 197 superfamily 266524
RRM3_U2AF65 RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa... cl17169 94.545 9.65E-24 351 - 438 specific 240678
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 105.315 8.76E-28 103 - 197 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 105.315 8.76E-28 103 - 197 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11145 PHATRDRAFT_11145 211877 195753 210280 Cre09.g391949.t1.1 AT1G60900.1 309221

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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