22305 pepsin_retropepsin_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22305	chr_4	pepsin_retropepsin_like superfamily	1315325	1318237	+	pepsin_retropepsin_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446114	Thaps22305.2, Thaps22305.1, Thaps22305.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0447

Most Highly Correlated Transcripts

bd1075 (bd1075) NA 0.9153	bd1100 (bd1100) NA 0.9004	22266 hypothetical protein 0.893	7256 hypothetical protein 0.8884	bd1870 (bd1870) NA 0.8882	12836 EEP superfamily 0.8824
22577 hypothetical protein 0.8675	12899 AAA 0.8655	23939 MORN superfamily 0.862	5790 hypothetical protein 0.8607

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
pepsin_retropepsin_like superfamily		Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and...	-	114.013		226 - 647	superfamily	264354

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46389	PHATRDRAFT_46389	209424	247979	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004194 GO:0006508 GO:0004190 GO:0009049 GO:0042499 GO:0042500 -

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