10615 DnaQ_like_exo superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10615 chr_17 DnaQ_like_exo superfamily 229300 231616 - DnaQ_like_exo superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444193 Thaps10615.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0323

Most Highly Correlated Transcripts

24604

hypothetical protein
0.897

23081

NADB_Rossmann superfamily
0.894

13308

PLN02948
0.8915

267979

HCO3_cotransp superfamily
0.8914

1205

PKc_like superfamily
0.8854

23469

Plus-3
0.8752

2318

Bromodomain
0.8733

25270

hypothetical protein
0.8717

10616

hypothetical protein
0.8709

28004

hypothetical protein
0.8703

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ANK superfamily ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of... - 67.4086 3.07E-13 60 - 156 superfamily 238125
ANK superfamily ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of... - 67.4086 3.07E-13 60 - 156 superfamily 238125
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 72.7112 1.59E-14 579 - 754 superfamily 263941
Ank_2 Ankyrin repeats (3 copies); Ankyrin repeats (3 copies). - 64.1995 2.15E-12 23 - 131 multi-dom 257303

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45013 PHATRDRAFT_45013 254443 13496 98203 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005622 GO:0008408 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0008408

3'-5' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO Category: 
MF

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