22596 PLN02296
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22596 chr_5 PLN02296 418873 419883 - PLN02296

Synonyms

NCBI ID Ensembl Genomes exon ID
7451750 Thaps22596.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Most Highly Correlated Transcripts

33348

IGPD superfamily
0.9396

21599

NDUFA12 superfamily
0.934

42867

Cytochrom_C1
0.9323

31113

Cyt_c_Oxidase_VIb
0.9306

3229

hypothetical protein
0.9239

36007

Aldolase_II superfamily
0.9233

35136

NA
0.9233

261627

(GPX2) GSH_Peroxidase
0.9194

17747

rplO
0.9194

20945

Tim17
0.9118

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA),... cl00160 214.583 1.44E-69 59 - 210 specific 100051
LbetaH superfamily Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each... - 214.583 1.44E-69 59 - 210 superfamily 260227
PLN02296 carbonate dehydratase - 227.701 5.48E-73 1 - 249 multi-dom 215167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35304 PHATRDRAFT_35304 153486 238928 63173 Cre09.g415850.t1.2 AT1G47260.1 537494

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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