22663 pepsin_retropepsin_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22663	chr_5	pepsin_retropepsin_like superfamily	754131	757263	-	pepsin_retropepsin_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446432	Thaps22663.2, Thaps22663.1, Thaps22663.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0116

Most Highly Correlated Transcripts

268011 Peptidase_M8 superfamily 0.8692	7645 Aldo_ket_red superfamily 0.8534	22409 hypothetical protein 0.8487	7537 Anoctamin 0.8486	25005 hypothetical protein 0.845	42646 PRK04342 0.8436
6723 hypothetical protein 0.84	11085 hypothetical protein 0.8353	4524 DHQS 0.8328	5256 hypothetical protein 0.8323

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
pepsin_retropepsin_like superfamily		Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and...	-	120.947	1.30E-29	437 - 897	superfamily	264354

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004194 GO:0006508 GO:0004190 GO:0009049 GO:0042499 GO:0042500 -

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