23147 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23147 chr_6 PUB 1138435 1139951 + PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7442379 Thaps23147.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0418

Most Highly Correlated Transcripts

bd877

(bd877) NA
0.8968

8849

U-box superfamily
0.8886

24475

(RPT3) PTZ00454
0.8864

36970

Fe-S_biosyn superfamily
0.886

6534

DER1
0.8829

35360

Autophagy_N
0.8707

bd410

(bd410) HNHc
0.8706

25583

UAS
0.8686

23630

UEV superfamily
0.8662

23792

Lipase_3
0.8633

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 73.9556 2.57E-16 326 - 414 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 73.9556 2.57E-16 326 - 414 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46483 PHATRDRAFT_46483 278408 162770 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005515 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

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