23228 ilvC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23228 chr_6 ilvC 1510676 1512665 - ilvC

Synonyms

NCBI ID Ensembl Genomes exon ID
7453316 Thaps23228.2, Thaps23228.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

bd756

(bd756) NA
0.8679

1326

sopT
0.8516

1888

hypothetical protein
0.8235

bd1828

(bd1828) NA
0.8191

270372

hypothetical protein
0.8184

40348

(cdc48) SpoVK
0.8182

20266

RRM_SF superfamily
0.811

21043

hypothetical protein
0.809

41898

(HSP70_2) HYOU1-like_NBD
0.8072

33008

PLN02338
0.8002

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IlvN superfamily Acetohydroxy acid isomeroreductase, catalytic domain; Acetohydroxy acid isomeroreductase catalyses... - 160.404 2.99E-46 76 - 250 superfamily 116601
IlvC superfamily Acetohydroxy acid isomeroreductase, catalytic domain; Acetohydroxy acid isomeroreductase catalyses... - 85.4079 1.52E-19 413 - 524 superfamily 250630
ilvC ketol-acid reductoisomerase; This is the second enzyme in the parallel isoleucine-valine... - 206.075 3.06E-61 76 - 400 multi-dom 129557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd348 PHATRDRAFT_bd348 166620 180541 Not available Cre10.g434750.t1.2 AT3G58610.3 537835

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004455 GO:0009082 -

GO:0004455

ketol-acid reductoisomerase activity

Details: 
Catalysis of the reaction: (R)-2,3-dihydroxy-3-methylbutanoate + NADP+ = (S)-2-hydroxy-2-methyl-3-oxobutanoate + NADPH + H+.
GO Category: 
MF

GO:0009082

branched-chain amino acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
GO Category: 
BP

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