23473 Cupin_8 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23473	chr_7	Cupin_8 superfamily	982006	983625	+	Cupin_8 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444130	Thaps23473.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0198

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0048	0.39	71000 7300

Most Highly Correlated Transcripts

17582 HAD-SF-IIA-hyp3 0.9419	7588 hypothetical protein 0.9279	4249 hypothetical protein 0.9218	22507 hypothetical protein 0.9206	33895 GlcD 0.9168	268896 DnaQ_like_exo superfamily 0.9129
22679 CbiO 0.9122	23573 hypothetical protein 0.9098	6481 hypothetical protein 0.9085	4260 WD40 0.9078

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cupin_8 superfamily		Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.	-	66.2195	1.66E-12	389 - 484	superfamily	267658

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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