23762 CAF1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23762	chr_8	CAF1 superfamily	595462	598095	-	CAF1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445604	Thaps23762.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0290

Most Highly Correlated Transcripts

bd1652 (bd1652) ABC_ATPase superfamily 0.9151	12899 AAA 0.9011	20621 hypothetical protein 0.8866	11178 Thioredoxin_like superfamily 0.8758	36007 Aldolase_II superfamily 0.8745	bd974 (bd974) DUF751 0.8728
268443 SAICAR_synt_Sc 0.8726	264556 FBPase 0.8693	263872 PRK14329 0.8688	25138 Methyltransf_32 0.8669

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAF1 superfamily		CAF1 family ribonuclease; The major pathways of mRNA turnover in eukaryotes initiate with...	-	71.8971	4.09E-14	490 - 636	superfamily	248145

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48338	PHATRDRAFT_48338	183679	323770	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
RNA degradation	map03018

GO Terms

GO:0005634 GO:0016481 GO:0016564 GO:0004535 -

Add comment

Log in to post comments