23908 TlyC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23908 chr_9 TlyC 82291 85111 - TlyC

Synonyms

NCBI ID Ensembl Genomes exon ID
7449258 Thaps23908.1, Thaps23908.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0191

Most Highly Correlated Transcripts

262824

COG4581
0.8844

264610

Prolidase
0.8742

bd874

(bd874) NA
0.8741

34191

CobN_like
0.8732

263945

Patatin_and_cPLA2 superfamily
0.8622

12836

EEP superfamily
0.8603

24627

hypothetical protein
0.8603

21751

DUF1336 superfamily
0.8564

9168

HP_HAP_like
0.8519

24883

Pat_PLPL
0.8507

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains... cl15354 121.058 8.25E-32 486 - 669 specific 239963
CBS_pair superfamily The CBS domain, named after human CBS, is a small domain originally identified in cystathionine... - 121.058 8.25E-32 486 - 669 superfamily 265675
DUF21 superfamily Domain of unknown function DUF21; This transmembrane region has no known function. Many of the... - 111.125 1.32E-27 268 - 463 superfamily 250731
DUF21 superfamily Domain of unknown function DUF21; This transmembrane region has no known function. Many of the... - 111.125 1.32E-27 268 - 463 superfamily 250731
CorC_HlyC Transporter associated domain; This small domain is found in a family of proteins with the DUF21... cl08393 72.0879 4.43E-15 693 - 772 specific 215020
CorC_HlyC superfamily Transporter associated domain; This small domain is found in a family of proteins with the... - 72.0879 4.43E-15 693 - 772 superfamily 263626
TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] - 287.656 1.53E-87 267 - 772 multi-dom 224173

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
26366 PHATRDRAFT_40783 PHATRDRAFT_40783 158419 226235 464911 Not available AT3G13070.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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