24084 TCP1_deltaThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24084	chr_9	TCP1_delta	1113898	1116314	+	TCP1_delta

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451006	Thaps24084.1, Thaps24084.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0155

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0114	0.48	0.0000000000017 0.0046

Most Highly Correlated Transcripts

bd1465 (bd1465) PKc_like superfamily 0.9494	25040 NA 0.8999	41005 odpB 0.8986	30981 NADB_Rossmann superfamily 0.8962	4612 hypothetical protein 0.8908	262977 NA 0.8899
bd624 (bd624) Glyco_transf_34 superfamily 0.889	268343 NA 0.8866	6983 hypothetical protein 0.8864	5105 hypothetical protein 0.886

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TCP1_delta		TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in...	cl02777	810.362	0	15 - 533	specific	239454
chaperonin_like superfamily		chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share...	-	810.362	0	15 - 533	superfamily	261443

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_30446	PHATRDRAFT_30446	237081	258516	463324	Cre05.g234639.t1.1	AT3G18190.1	315720

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005515 GO:0005524 GO:0044267 GO:0003763 -

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