24328 ANK
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24328 chr_11a ANK 363839 366735 - ANK

Synonyms

NCBI ID Ensembl Genomes exon ID
7443297 Thaps24328.3, Thaps24328.2, Thaps24328.4, Thaps24328.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0397

Most Highly Correlated Transcripts

268232

COG3899
0.9165

1197

RhaT
0.9158

261448

PLN02205
0.9121

8562

hypothetical protein
0.91

2742

DUF1336 superfamily
0.9081

23602

hypothetical protein
0.9078

1528

Evr1_Alr superfamily
0.9071

4873

hypothetical protein
0.9059

8415

P4Hc
0.9027

6630

hypothetical protein
0.9026

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ANK superfamily ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of... - 67.7938 3.11E-13 132 - 300 superfamily 238125
ANK superfamily ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of... - 67.7938 3.11E-13 132 - 300 superfamily 238125
Ion_trans Ion transport protein; This family contains Sodium, Potassium, Calcium ion channels. This family is... - 65.0015 4.56E-12 429 - 625 multi-dom 249927

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49054 PHATRDRAFT_49054 237208 253683 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005261 GO:0006812 GO:0016020 GO:0005216 GO:0006811 GO:0008766 GO:0016881 GO:0018169 -

GO:0005261

cation channel activity

Details: 
Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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