24331 (Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24331 chr_11a (Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily 386195 391751 + KAT11 superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Most Highly Correlated Transcripts

25451

AAA superfamily
0.9271

1732

hypothetical protein
0.9259

3934

COG2319
0.9237

24489

TPR_12
0.9216

25079

hypothetical protein
0.9172

21122

Nipped-B_C
0.9168

24852

hypothetical protein
0.9146

21997

TPR_12
0.9146

21580

RNB
0.9145

23582

hypothetical protein
0.914

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KAT11 superfamily Histone acetylation protein; Histone acetylation is required in many cellular processes including... - 219.978 7.93E-63 1130 - 1402 superfamily 261185
Bromodomain superfamily Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone... - 151.714 4.66E-42 833 - 929 superfamily 261339
zf-TAZ TAZ zinc finger; The TAZ2 domain of CBP binds to other transcription factors such as the p53 tumor... cl02660 74.3223 1.41E-15 433 - 504 specific 251111
zf-TAZ superfamily TAZ zinc finger; The TAZ2 domain of CBP binds to other transcription factors such as the p53 tumor... - 74.3223 1.41E-15 433 - 504 superfamily 261396
zf-TAZ TAZ zinc finger; The TAZ2 domain of CBP binds to other transcription factors such as the p53 tumor... cl02660 74.3223 1.41E-15 433 - 504 specific 251111
zf-TAZ superfamily TAZ zinc finger; The TAZ2 domain of CBP binds to other transcription factors such as the p53 tumor... - 74.3223 1.41E-15 433 - 504 superfamily 261396

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003712 GO:0005634 GO:0006355 GO:0008270 GO:0003677 GO:0003713 GO:0045449 GO:0004402 -

GO:0003712

transcription cofactor activity

Details: 
Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003713

transcription coactivator activity

Details: 
Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
GO Category: 
MF

GO:0045449

NA

Details: 
NA
GO Category: 
NA

GO:0004402

histone acetyltransferase activity

Details: 
Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
GO Category: 
MF

Add comment

Log in to post comments