24363 SbcCThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24363	chr_11a	SbcC	582699	586697	-	SbcC

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442336	Thaps24363.2, Thaps24363.4, Thaps24363.1, Thaps24363.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0060

Most Highly Correlated Transcripts

bd911 (bd911) GH18_chitinase-like superfamily 0.9034	270222 0.897	260833 Uup 0.8893	bd258 (bd258) HU 0.8817	7310 hypothetical protein 0.8783	ThpsCp134 (rpl34) ribosomal protein L34 0.8735
40001 PRK05433 0.865	bd1221 (bd1221) recQ_fam 0.8626	40200 TRX_reduct 0.8505	41892 PtrB 0.8503

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SbcC		ATPase involved in DNA repair [DNA replication, recombination, and repair]	-	84.4267	8.87E-17	348 - 901	multi-dom	223496

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	323032	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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