41892 PtrB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41892 chr_10 PtrB 879662 882239 + PtrB

Synonyms

NCBI ID Ensembl Genomes exon ID
7446906 Thaps41892.2, Thaps41892.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0050

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

261083

(Tp_sigma70.1) Sig70-cyanoRpoD
0.8981

267979

HCO3_cotransp superfamily
0.8816

36007

Aldolase_II superfamily
0.8802

35164

acolac_lg
0.8766

40200

TRX_reduct
0.8725

bd875

(bd875) NA
0.8718

bd1221

(bd1221) recQ_fam
0.8658

41403

ABCC_MRP_domain2
0.864

13393

PLN02321
0.8629

260833

Uup
0.8585

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_S9 Prolyl oligopeptidase family; Prolyl oligopeptidase family. cl19144 196.67 1.05E-57 609 - 827 specific 249771
Peptidase_S9 superfamily Prolyl oligopeptidase family; Prolyl oligopeptidase family. - 196.67 1.05E-57 609 - 827 superfamily 267497
PtrB Protease II [Amino acid transport and metabolism] - 691.729 0 133 - 829 multi-dom 224684

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24161 PHATRDRAFT_24161 268926 179995 69975 Cre17.g697650.t1.1 AT1G50380.1 345188

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 GO:0004287 GO:0004252 GO:0008945 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004287

NA

Details: 
NA
GO Category: 
NA

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0008945

NA

Details: 
NA
GO Category: 
NA

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