24375 P4Hc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24375 chr_11a P4Hc 678445 680663 - P4Hc

Synonyms

NCBI ID Ensembl Genomes exon ID
7445402 Thaps24375.1, Thaps24375.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0470

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0046
 0.42

Most Highly Correlated Transcripts

bd1748

(bd1748) NA
0.8634

21090

hypothetical protein
0.8486

22288

hypothetical protein
0.8468

269820

2A43
0.8466

bd1788

(bd1788) NA
0.822

bd692

(bd692) NA
0.8158

24523

hypothetical protein
0.8149

18662

ADK
0.8104

16114

PLN02350
0.8085

36995

LplA
0.8075

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
P4Hc Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen... cl17304 103.622 1.29E-25 410 - 588 specific 214780
2OG-FeII_Oxy_3 superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 103.622 1.29E-25 410 - 588 superfamily 266616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 465463 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016706 GO:0019538 -

GO:0016706

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Details: 
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
GO Category: 
MF

GO:0019538

protein metabolic process

Details: 
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
GO Category: 
BP

Add comment

Log in to post comments