24656 U-box superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24656 chr_13 U-box superfamily 471994 476511 + U-box superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453036 Thaps24656.2, Thaps24656.1, Thaps24656.3, Thaps24656.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0375

Most Highly Correlated Transcripts

4108

hypothetical protein
0.934

22821

hypothetical protein
0.9074

22184

hypothetical protein
0.895

6459

Spc97_Spc98
0.8862

20864

hypothetical protein
0.8812

268825

COG5647
0.8785

21791

hypothetical protein
0.8782

21201

hypothetical protein
0.8774

1863

hypothetical protein
0.8765

7119

pepsin_retropepsin_like superfamily
0.8749

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
U-box superfamily U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding... - 61.9432 2.41E-11 1275 - 1361 superfamily 266741

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 246814 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006457 GO:0031072 GO:0051082 GO:0000151 GO:0004842 GO:0016567 GO:0003676 -

GO:0006457

protein folding

Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO Category: 
BP

GO:0031072

heat shock protein binding

Details: 
Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
GO Category: 
MF

GO:0051082

unfolded protein binding

Details: 
Interacting selectively and non-covalently with an unfolded protein.
GO Category: 
MF

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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