24904 PIN_SF superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24904	chr_14	PIN_SF superfamily	772655	773751	+	PIN_SF superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441811	Thaps24904.2, Thaps24904.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0224

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0101	0.32	0.0013 0.0095

Most Highly Correlated Transcripts

bd96 (bd96) eIF-3_zeta 0.9253	22099 hypothetical protein 0.9224	262775 RBFA 0.9194	bd1807 (bd1807) RRS1 superfamily 0.9145	28755 NSA2 0.9131	bd1945 (bd1945) NA 0.9082
bd190 (bd190) SrmB 0.9074	41419 (RT4) RpsD 0.9061	bd1876 (bd1876) NatB_MDM20 superfamily 0.9005	5421 hypothetical protein 0.896

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PIN_SF superfamily		PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a...	-	91.0978	1.10E-22	5 - 181	superfamily	265458

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	AT2G34570.1	350283

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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