25140 zf-CXXC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25140 chr_16a zf-CXXC 307494 315716 - zf-CXXC

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0031

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0125
 0.41

Most Highly Correlated Transcripts

1936

hypothetical protein
0.8091

bd298

(bd298) ABM superfamily
0.8045

25787

hypothetical protein
0.7922

270336

hypothetical protein
0.7853

907

hypothetical protein
0.7722

270281

hypothetical protein
0.7609

bd1778

(bd1778) COG2329
0.7595

4748

hypothetical protein
0.7573

270376

hypothetical protein
0.7548

270261

hypothetical protein
0.7527

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
zf-CXXC superfamily CXXC zinc finger domain; This domain contains eight conserved cysteine residues that bind to two... - 65.4452 1.75E-12 1718 - 1757 superfamily 251032
zf-CXXC superfamily CXXC zinc finger domain; This domain contains eight conserved cysteine residues that bind to two... - 65.4452 1.75E-12 1718 - 1757 superfamily 251032
PHD PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... cl17445 61.742 3.18E-11 1056 - 1096 specific 250011
PHD superfamily PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner... - 61.742 3.18E-11 1056 - 1096 superfamily 266687

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11235 PHATRDRAFT_11235 234952 210246 425734 Not available AT5G22760.1 293066

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 GO:0008270 GO:0004339 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0004339

glucan 1,4-alpha-glucosidase activity

Details: 
Catalysis of the hydrolysis of terminal (1->4)-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose.
GO Category: 
MF

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