25795 REX4_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25795 chr_22 REX4_like 961890 972084 - REX4_like

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

262091

eukaryotic translation initiation factor 3, subunit 10
0.8924

34596

WD40
0.8884

25824

hypothetical protein
0.888

39540

Alpha_ANH_like_II
0.8743

24314

hypothetical protein
0.8741

41038

(P5CS) PLN02418
0.8738

32395

RNA_pol
0.8722

21460

Peptidase_C19 superfamily
0.8719

22302

Peptidase_C19 superfamily
0.8716

21654

hypothetical protein
0.8705

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated... cl10012 204.287 2.77E-59 173 - 339 specific 99847
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 204.287 2.77E-59 173 - 339 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43336 PHATRDRAFT_43336 259775 254700 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004527 GO:0005622 -

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

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