21460 Peptidase_C19 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21460 chr_2 Peptidase_C19 superfamily 1865791 1868365 - Peptidase_C19 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452318 Thaps21460.1, Thaps21460.3, Thaps21460.4, Thaps21460.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0318

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

25795

REX4_like
0.8719

263046

HA
0.8697

25247

Nudix_Hydrolase superfamily
0.8693

20930

DRE_TIM_metallolyase superfamily
0.8643

21368

hypothetical protein
0.8622

12899

AAA
0.8566

24025

hypothetical protein
0.8551

263872

PRK14329
0.8536

25434

PRK00142
0.8531

7450

hypothetical protein
0.8509

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 182.842 1.55E-51 244 - 741 superfamily 261337
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 145.243 1.72E-38 244 - 676 multi-dom 249862

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40154 PHATRDRAFT_40154 256957 165362 441425 Cre07.g336200.t1.1 AT3G11910.2 554626

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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