261569 RRM3_CELF1-6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261569 chr_2 RRM3_CELF1-6 2217811 2219229 + RRM3_CELF1-6

Synonyms

NCBI ID Ensembl Genomes exon ID
7450438 Thaps261569.1, Thaps261569.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0443

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0219
 0.41

Most Highly Correlated Transcripts

bd463

(bd463) Aa_trans superfamily
0.8829

bd1758

(bd1758) NA
0.8777

bd950

(bd950) NA
0.8697

3973

(Tp_E2F-DP3) E2F_TDP
0.8625

bd1893

(bd1893) NA
0.8502

bd1757

(bd1757) NA
0.848

bd760

(bd760) ZnMc superfamily
0.8434

bd758

(bd758) NA
0.8396

bd843

(bd843) NA
0.8347

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8306

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM3_CELF1-6 RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3,... cl17169 140.465 1.19E-40 254 - 326 specific 240808
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 140.465 1.19E-40 254 - 326 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 83.0726 5.17E-18 174 - 385 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8445 PHATRDRAFT_8445 145488 132311 Not available Not available Not available 346711

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

Add comment

Log in to post comments