261885 RRM1_RBM34Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261885	chr_3	RRM1_RBM34	1694420	1695534	-	RRM1_RBM34

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449539	Thaps261885.4, Thaps261885.1, Thaps261885.2, Thaps261885.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0224

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0109	0.50	0.00000011 0.067

Most Highly Correlated Transcripts

bd524 (bd524) NA 0.9223	bd1807 (bd1807) RRS1 superfamily 0.916	bd1709 (bd1709) NA 0.9016	11824 hypothetical protein 0.8958	20731 Mito_carr 0.8944	22099 hypothetical protein 0.8928
4372 hypothetical protein 0.8912	35041 COG1094 0.8874	24390 hypothetical protein 0.8861	28755 NSA2 0.8849

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM1_RBM34		RNA recognition motif 1 in RNA-binding protein 34 (RBM34) and similar proteins; This subfamily...	cl17169	92.323	1.57E-23	118 - 215	specific	240840
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	90.6833	3.52E-23	232 - 311	superfamily	266524
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	90.6833	3.52E-23	232 - 311	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	60.3458	9.81E-11	193 - 311	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46145	PHATRDRAFT_46145	153012	326878	Not available	Cre16.g659150.t1.1	AT5G46840.2	479368

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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