262099 PLPDE_III_AR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262099 chr_4 PLPDE_III_AR 617511 619831 + PLPDE_III_AR

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0391

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0013
 0.47

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8823

8287

hypothetical protein
0.8284

268839

RRM1_TatSF1_like
0.8248

263313

Peptidase_M8 superfamily
0.8237

21795

SCP superfamily
0.8179

263142

FtsJ
0.8148

263246

PI-PLCc_eukaryota
0.8138

35713

hypothetical protein
0.8054

33454

Ac_CoA_lig_AcsA
0.8021

262103

C2_PLC_like
0.7971

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase; This family includes... cl00261 260.121 1.02E-82 13 - 402 specific 143481
PLPDE_III superfamily Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; The fold type III PLP-dependent enzyme... - 260.121 1.02E-82 13 - 402 superfamily 260308
Alr Alanine racemase [Cell envelope biogenesis, outer membrane] - 221.696 5.22E-68 18 - 404 multi-dom 223858

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47025 PHATRDRAFT_47025 158204 319262 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006522 GO:0008784 -

GO:0006522

alanine metabolic process

Details: 
The chemical reactions and pathways involving alanine, 2-aminopropanoic acid.
GO Category: 
BP

GO:0008784

alanine racemase activity

Details: 
Catalysis of the reaction: L-alanine = D-alanine.
GO Category: 
MF

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