262343 LacZ
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262343 chr_4 LacZ 2241220 2244559 + LacZ

Synonyms

NCBI ID Ensembl Genomes exon ID
7452253 Thaps262343.2, Thaps262343.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0273

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0186
 0.38

Most Highly Correlated Transcripts

267979

HCO3_cotransp superfamily
0.8821

32395

RNA_pol
0.8729

268766

MdlB
0.8717

22448

hypothetical protein
0.867

4372

hypothetical protein
0.8541

28816

(RPC1) PRK08566
0.8493

13308

PLN02948
0.8488

11147

HP_PGM_like
0.8434

31928

ATM1
0.8406

20682

hypothetical protein
0.8405

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] - 87.0843 1.13E-17 409 - 590 multi-dom 225789

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 231619 Not available AT1G09010.1 300142

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0006508 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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