262371 AAA_12 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262371	chr_5	AAA_12 superfamily	70574	75502	+	AAA_12 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447240	Thaps262371.6, Thaps262371.5, Thaps262371.4, Thaps262371.1, Thaps262371.7, Thaps262371.3, Thaps262371.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0254

Most Highly Correlated Transcripts

24828 CAP_GLY 0.9484	9912 hypothetical protein 0.9375	268346 hypothetical protein 0.9324	22620 (Tp_AP2-EREBP1) regulator [Rayko] 0.9323	20865 DUF1162 superfamily 0.9319	269064 Nup84_Nup100 superfamily 0.9317
1057 PIH1 superfamily 0.9311	21268 zf-CXXC 0.9291	22603 COG3899 0.926	27556 HSH155 0.9256

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	128.05	8.27E-33	1248 - 1440	superfamily	257490
AAA_11		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	83.8298	6.07E-18	942 - 1239	multi-dom	257489
COG1112		Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and...	-	129.311	1.59E-30	1155 - 1457	multi-dom	224037

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_259	PHATRDRAFT_259	255450	256274	125138	Cre06.g300750.t1.1	AT2G38770.1	250846

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

Not available -

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