262615 Syja_NThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262615	chr_5	Syja_N	1819389	1821976	+	Syja_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445228	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0243

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0191	0.44	0.0000000058 2.1

Most Highly Correlated Transcripts

1268 hypothetical protein 0.8777	264905 FeFe_hydrog_A 0.8735	20630 Piwi-like superfamily 0.8732	3719 DECH_helic 0.8683	262573 G_glu_transpept 0.868	23130 NT_PAP_TUTase 0.8666
5694 hypothetical protein 0.8652	263610 COG3899 0.8612	262858 (IKI3) IKI3 0.8565	262439 Bromodomain superfamily 0.8556

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Syja_N superfamily		SacI homology domain; This Pfam family represents a protein domain which shows homology to the...	-	182.421	1.05E-51	257 - 617	superfamily	251261
Syja_N superfamily		SacI homology domain; This Pfam family represents a protein domain which shows homology to the...	-	182.421	1.05E-51	257 - 617	superfamily	251261

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	172625	49425	Not available	Cre09.g388750.t1.2	AT3G51460.1	565275

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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