263108 SmcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263108	chr_7	Smc	531198	535967	+	Smc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448981	Thaps263108.3, Thaps263108.2, Thaps263108.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0453

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0248	0.34	3800 40000

Most Highly Correlated Transcripts

5321 CobN-Mg_chel superfamily 0.8948	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.8884	22916 DUF1162 superfamily 0.8873	32564 KISc 0.8865	5858 hypothetical protein 0.8843	264576 lysozyme_like superfamily 0.8843
36563 MYSc 0.8838	22258 PUB 0.8818	37638 HrpA 0.8798	33984 PKc_like superfamily 0.8794

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MORN superfamily		MORN repeat; The MORN (Membrane Occupation and Recognition Nexus) repeat is found in multiple...	-	73.234	1.28E-14	1393 - 1501	superfamily	265453
Smc		Chromosome segregation ATPases [Cell division and chromosome partitioning]	-	112.5	3.94E-25	368 - 1069	multi-dom	224117

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	159229	Not available	355454	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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