263128 GAFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263128	chr_7	GAF	668203	669760	-	GAF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449012	Thaps263128.2, Thaps263128.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0304

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0037	0.54	0.29 0.0000000088

Most Highly Correlated Transcripts

262785 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, atpase-like protein 0.8474	36007 Aldolase_II superfamily 0.8264	264498 PRK00142 0.818	35164 acolac_lg 0.813	267979 HCO3_cotransp superfamily 0.8108	38475 HA2 0.8085
261324 PLN02724 0.8065	22385 SAC3_GANP 0.8059	22690 RRM_Nop6 0.8022	2318 Bromodomain 0.7985

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GAF		Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains...	cl17456	79.3476	1.52E-17	159 - 326	specific	214500
GAF superfamily		GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl...	-	79.3476	1.52E-17	159 - 326	superfamily	266697

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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