263228 AAA_28Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263228	chr_7	AAA_28	1320814	1322469	+	AAA_28

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447114	Thaps263228.1, Thaps263228.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0389

Most Highly Correlated Transcripts

13448 Sec1 0.9269	12899 AAA 0.8903	10903 hypothetical protein 0.8777	32782 MPN superfamily 0.8741	22407 hypothetical protein 0.8709	1906 hypothetical protein 0.8677
263385 Aa_trans superfamily 0.8667	2494 UAA 0.8651	16295 FBPase 0.8631	262803 syntaxin 0.8628

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_28		AAA domain; AAA domain.	cl19128	106.88	5.50E-27	160 - 344	specific	257841
AAA_17 superfamily		AAA domain; AAA domain.	-	106.88	5.50E-27	160 - 344	superfamily	267481

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47853	PHATRDRAFT_47853	210991	298924	462927	Not available	Not available	348519

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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