263483 CHDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263483	chr_9	CHD	146772	148597	-	CHD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444994	Thaps263483.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0252

Most Highly Correlated Transcripts

23130 NT_PAP_TUTase 0.9535	264276 Vps8 superfamily 0.9402	3331 Bac_rhamnosid superfamily 0.9376	11613 hypothetical protein 0.9358	261056 (APB3) Adaptin_N 0.9331	3719 DECH_helic 0.9319
263051 ZntA 0.9296	8384 hypothetical protein 0.9179	263610 COG3899 0.9161	262439 Bromodomain superfamily 0.9156

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CHD		cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also...	cl11967	76.849	3.35E-16	467 - 608	specific	143636
Nucleotidyl_cyc_III superfamily		Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group...	-	76.849	3.35E-16	467 - 608	superfamily	264492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	340204

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

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