263495 PRK11824
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263495 chr_9 PRK11824 203406 207544 + PRK11824

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0289

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0119
 0.42

Most Highly Correlated Transcripts

bd894

(bd894) Peptidase_M14_like superfamily
0.9448

4108

hypothetical protein
0.9285

bd731

(bd731) NA
0.9077

bd1465

(bd1465) PKc_like superfamily
0.9045

992

hypothetical protein
0.8855

bd1464

(bd1464) CAP_ED
0.8721

bd137

(bd137) Motor_domain superfamily
0.8532

262303

(Helicase_2) UvrD-helicase
0.8476

20800

XRN_N superfamily
0.8463

15976

PTZ00348
0.8415

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 140.731 3.78E-37 416 - 638 superfamily 261591
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 140.731 3.78E-37 416 - 638 superfamily 261591
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 86.8276 4.11E-20 1041 - 1116 superfamily 263921
PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional - 548.496 0 416 - 1120 multi-dom 236995

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44863 PHATRDRAFT_44863 194953 252552 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0003676 GO:0004654 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004654

polyribonucleotide nucleotidyltransferase activity

Details: 
Catalysis of the reaction: ATP + RNA(n) = diphosphate + RNA(n+1).
GO Category: 
MF

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