263925 SpoT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263925 chr_12 SpoT 825767 827526 + SpoT

Synonyms

NCBI ID Ensembl Genomes exon ID
7448001 Thaps263925.4, Thaps263925.2, Thaps263925.1, Thaps263925.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0147

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0011
 0.46

Most Highly Correlated Transcripts

261400

NA
0.9467

bd874

(bd874) NA
0.917

29496

hypothetical protein
0.906

30701

PRK05279
0.9054

268868

(ERCC2) rad3
0.902

bd392

(bd392) DEXDc
0.9018

2154

hypothetical protein
0.8997

9725

hypothetical protein
0.8896

268338

(FAO1) fadB
0.8833

31069

S_TKc
0.8833

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; This... cl11966 86.6322 2.16E-20 143 - 267 specific 143389
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 86.6322 2.16E-20 143 - 267 superfamily 264491
SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms /... - 152.79 1.58E-40 84 - 283 multi-dom 223394

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 178926 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015969 -

GO:0015969

guanosine tetraphosphate metabolic process

Details: 
The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
GO Category: 
BP

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