264322 MIF4GThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264322	chr_15	MIF4G	622556	625220	-	MIF4G

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443948	Thaps264322.6, Thaps264322.7, Thaps264322.5, Thaps264322.4, Thaps264322.2, Thaps264322.1, Thaps264322.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0147	0.38	0.21 17000

Most Highly Correlated Transcripts

262616 (MYB22) 0.8658	23361 hypothetical protein 0.8529	21568 hypothetical protein 0.8528	12899 AAA 0.8501	34303 TEF1 0.8426	43160 (TPS1) TrpRS_core 0.8426
25307 hypothetical protein 0.8384	23340 hypothetical protein 0.8383	20232 AAA_12 0.8356	22442 CHD 0.8345

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MIF4G		MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also...	cl02652	128.213	2.08E-34	36 - 270	specific	251572
MIF4G superfamily		MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also...	-	128.213	2.08E-34	36 - 270	superfamily	261392

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47943	PHATRDRAFT_47943	173137	200201	448761	Cre17.g696250.t1.1	AT3G60240.2	Not available

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

GO:0003723 -

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