264761 (LigaseIV) DNA_ligase_A_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264761 chr_22 (LigaseIV) DNA_ligase_A_N 59509 60937 + DNA_ligase_A_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7443664 Thaps264761.2, Thaps264761.3, Thaps264761.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0178

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0021
 0.47

Most Highly Correlated Transcripts

bd1816

(bd1816) NA
0.9274

4842

Cas1_AcylT superfamily
0.8714

5833

hypothetical protein
0.8681

7601

hypothetical protein
0.8623

263989

(HSF13) hypothetical protein
0.8596

11869

hypothetical protein
0.8537

262607

WD40 superfamily
0.8483

262751

ERO1
0.8458

2031

hypothetical protein
0.8454

2587

O-FucT_like
0.8423

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 68.0237 1.14E-13 168 - 366 superfamily 252736
DNA_ligase_A_N superfamily DNA ligase N terminus; This region is found in many but not all ATP-dependent DNA ligase enzymes (... - 68.0237 1.14E-13 168 - 366 superfamily 252736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50218 PHATRDRAFT_50218 Not available 322119 Not available Not available Not available 284249

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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