264853 (Tp_Myb3R1) SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264853 chr_22 (Tp_Myb3R1) SANT 752869 754407 - SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7448222 Thaps264853.2, Thaps264853.3, Thaps264853.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0076

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0043
 0.36

Most Highly Correlated Transcripts

bd2073

(bd2073) psbB
0.9557

bd1313

(bd1313) psbH
0.9445

bd668

(bd668) NA
0.9355

bd1387

(bd1387) psbE
0.9284

bd843

(bd843) NA
0.9168

bd1037

(bd1037) Ycf66_N
0.9166

bd1304

(bd1304) Ycf4
0.9136

bd951

(bd951) NA
0.8991

bd1192

(bd1192) Acyl_ACP_Desat
0.8932

bd1378

(bd1378) atpI
0.8913

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 61.4374 3.35E-12 289 - 330 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 61.4374 3.35E-12 289 - 330 superfamily 266586
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 61.4374 3.35E-12 289 - 330 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 61.4374 3.35E-12 289 - 330 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15016 PHATRDRAFT_15016 199622 208412 430959 Cre16.g677382.t1.1 AT5G02320.2 496502

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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