264926 crtI_fam
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264926 chr_23 crtI_fam 377286 379486 + crtI_fam

Synonyms

NCBI ID Ensembl Genomes exon ID
7442683 Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0310

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

bd1756

(bd1756) NA
0.8498

bd1839

(bd1839) NA
0.84

11664

DUF3510
0.8172

23094

hypothetical protein
0.8148

6395

NAD_binding_8 superfamily
0.8073

6086

hypothetical protein
0.8058

9650

hypothetical protein
0.8012

8706

UgpQ
0.801

8828

WD40 superfamily
0.8007

22474

hypothetical protein
0.7992

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
crtI_fam phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical... - 204.056 5.99E-58 93 - 617 multi-dom 233988

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43904 PHATRDRAFT_43904 248643 235406 458688 Cre12.g541750.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016117 GO:0016705 GO:0050660 -

GO:0016117

carotenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
GO Category: 
BP

GO:0016705

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

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