268010 (RPC2) PRK08565
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268010 chr_1 (RPC2) PRK08565 1244718 1248542 - PRK08565

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0119
 0.42

Most Highly Correlated Transcripts

22728

hypothetical protein
0.912

38475

HA2
0.902

38509

YihA_EngB
0.8951

5007

hypothetical protein
0.895

9017

hypothetical protein
0.8943

4574

hypothetical protein
0.8927

20930

DRE_TIM_metallolyase superfamily
0.8916

2897

NGN_Euk
0.8907

31932

hypothetical protein
0.8907

32229

MogA_MoaB
0.8893

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 1102.24 0 2 - 1103 superfamily 238353
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 1102.24 0 2 - 1103 superfamily 238353
RNA_pol_Rpb2_4 superfamily RNA polymerase Rpb2, domain 4; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 88.8894 5.77E-21 506 - 567 superfamily 113341
RNA_pol_Rpb2_5 superfamily RNA polymerase Rpb2, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 59.9033 5.39E-11 592 - 631 superfamily 191029
RNA_pol_Rpb2_5 superfamily RNA polymerase Rpb2, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 59.9033 5.39E-11 592 - 631 superfamily 191029
PRK08565 DNA-directed RNA polymerase subunit B; Provisional - 1010.26 0 2 - 1108 multi-dom 236291

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54289 PHATRDRAFT_54289 277325 318148 427295 Cre02.g075150.t1.2 AT5G45140.1 340380

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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