269148 PLN00116
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269148 chr_6 PLN00116 1462437 1465458 + PLN00116

Synonyms

NCBI ID Ensembl Genomes exon ID
7442740 Thaps269148.3, Thaps269148.1, Thaps269148.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0227
 0.33

Most Highly Correlated Transcripts

plastid_psb28

0.925

6028

NA
0.8599

plastidpF

0.8531

bd446

(bd446) HrpA
0.851

38964

Chorismate_synthase
0.8492

13393

PLN02321
0.8457

bd1221

(bd1221) recQ_fam
0.8388

262977

NA
0.8378

bd719

(bd719) NA
0.8365

262510

Alg6_Alg8 superfamily
0.8352

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF2 Elongation Factor 2 (EF2) in archaea and eukarya; Translocation requires hydrolysis of a molecule... cl17170 362.705 2.37E-119 20 - 225 specific 206672
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 362.705 2.37E-119 20 - 225 superfamily 266525
aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an... cl02789 276.759 2.07E-87 552 - 724 specific 238839
EFG_like_IV superfamily Elongation Factor G-like domain IV. This family includes the translational elongation factor termed... - 276.759 2.07E-87 552 - 724 superfamily 243187
eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found... cl02787 153.873 8.64E-44 372 - 465 specific 239671
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 153.873 8.64E-44 372 - 465 superfamily 261449
eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (... cl02785 148.843 3.52E-42 720 - 798 specific 239763
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 148.843 3.52E-42 720 - 798 superfamily 261447
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 73.617 8.81E-16 481 - 551 superfamily 258632
PLN00116 translation elongation factor EF-2 subunit; Provisional - 1645.6 0 1 - 835 multi-dom 177730

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35766 PHATRDRAFT_35766 260750 42700 312577 Cre12.g516200.t1.2 AT5G25230.1 353901

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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